Here's a look with the shrink tubing removed:
Click to enlarge photos and see colors more clearly.
Stock wire harness.
Headlight/indicator bulb wires (Note: there is also a BLUE wire here that was cut too short to be seen in the picture below, but it is part of the headlight):
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Kill switch wires:
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Horn wires:
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Rear brake light switch wires:
Tail light wires:
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HT Coil wires:
My stator was rewired exactly to match stock and photos are posted on this blog.